STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1907Hydantase: amidase, hydantoinase/carbamoylase family protein. (429 aa)    
Predicted Functional Partners:
hydA
D-hydantoinase: dihydropyrimidinase.
 
 
 0.955
uraD
UHCUDC: OHCU decarboxylase.
  
 0.919
DM40_5427
pyrD_sub1_fam: dihydroorotate dehydrogenase family domain protein.
 
 0.917
DM40_4140
Hydantase: amidase, hydantoinase/carbamoylase family protein.
  
  
 
0.756
DM40_5429
Hydantase: amidase, hydantoinase/carbamoylase family protein.
  
  
 
0.754
argA
N-Ac-Glu-synth: amino-acid N-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily.
  
 
 0.708
DM40_5428
FAD binding domain protein.
 
 
  0.701
DM40_1908
Histone deacetylase domain protein.
       0.690
DM40_1906
Sugar (and other) transporter family protein.
       0.666
DM40_3237
Cupin domain protein.
 
 
 0.555
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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