STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
madMmalonate_madM: malonate transporter, MadM subunit. (255 aa)    
Predicted Functional Partners:
madL
malonate_madL: malonate transporter, MadL subunit.
 
   
 0.969
mdcC
Malonate_delta: malonate decarboxylase acyl carrier protein.
 
     0.829
mdcA
mdcA: malonate decarboxylase, alpha subunit.
 
     0.828
mdcE
Malonate_gamma: malonate decarboxylase, gamma subunit.
 
     0.811
mdcB
triphosphoribosyl-dephospho-CoA synthase MdcB; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
     0.808
mdcD
Malonate_beta: malonate decarboxylase, beta subunit.
 
     0.801
mdcG
malonate_mdcG: malonate decarboxylase holo-[acyl-carrier-protein] synthase.
 
     0.768
mdcH
malonate_mdcH: malonate decarboxylase, epsilon subunit.
 
   
 0.667
citN
Citrate transporter.
  
   
 0.400
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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