STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdcEMalonate_gamma: malonate decarboxylase, gamma subunit. (235 aa)    
Predicted Functional Partners:
uca
Urea_carbox: urea carboxylase.
  
 0.998
DM40_3093
D-ala D-ala ligase family protein.
  
 0.995
mdcD
Malonate_beta: malonate decarboxylase, beta subunit.
 
 
 0.973
mdcA
mdcA: malonate decarboxylase, alpha subunit.
 
  
  0.971
mdcH
malonate_mdcH: malonate decarboxylase, epsilon subunit.
 
 
 0.968
mdcC
Malonate_delta: malonate decarboxylase acyl carrier protein.
 
     0.952
mdcG
malonate_mdcG: malonate decarboxylase holo-[acyl-carrier-protein] synthase.
 
     0.952
mdcB
triphosphoribosyl-dephospho-CoA synthase MdcB; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
     0.952
DM40_504
birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase.
  
 
 0.901
madL
malonate_madL: malonate transporter, MadL subunit.
 
     0.813
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.