STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1990mltA-interacting MipA family protein. (248 aa)    
Predicted Functional Partners:
DM40_804
Gram-negative porin family protein.
  
     0.671
DM40_1988
HAMP domain protein.
 
     0.652
DM40_1514
Hypothetical protein.
  
     0.626
DM40_1675
Hypothetical protein.
  
     0.567
DM40_3013
F5/8 type C domain protein.
  
    0.552
DM40_1452
Hypothetical protein.
  
     0.531
DM40_1989
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
     0.529
DM40_3249
Peptidase MA superfamily protein.
  
     0.528
DM40_4743
Hypothetical protein.
 
     0.517
DM40_3077
Hypothetical protein.
  
     0.509
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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