STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2017Isochorismatase family protein. (228 aa)    
Predicted Functional Partners:
DM40_2016
xapX: XapX domain protein.
 
    0.848
DM40_2020
Amidohydrolase family protein.
 
     0.775
DM40_5839
Amidohydrolase family protein.
 
     0.775
DM40_5845
Amidohydrolase family protein.
 
     0.775
DM40_5838
xapX: XapX domain protein.
 
    0.746
DM40_2019
xapX: XapX domain protein.
 
    0.743
DM40_5836
xapX: XapX domain protein.
 
    0.740
DM40_5841
Alginate export family protein.
 
     0.612
DM40_2024
Alginate export family protein.
 
     0.567
gpsA
NAD-dependent glycerol-3-phosphate dehydrogenase family protein; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
   0.536
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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