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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2078FAD binding domain protein. (473 aa)    
Predicted Functional Partners:
DM40_2079
Hypothetical protein.
 
     0.823
wrbA
NAD(P)H:quinone oxidoreductase, type IV; flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV; Belongs to the WrbA family.
       0.790
DM40_1121
Glutamine amidotransferases class-II family protein.
    
 0.732
DM40_2077
Calcineurin-like phosphoesterase family protein.
       0.708
DM40_1030
Malic enzyme, NAD binding domain protein; Belongs to the malic enzymes family.
  
 
 0.620
DM40_1335
Malic enzyme, NAD binding domain protein.
  
 
 0.620
DM40_4997
Malic enzyme, NAD binding domain protein.
  
 
 0.620
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
     
 0.618
DM40_4364
ubiA prenyltransferase family protein.
    
 0.599
DM40_1427
FAD binding domain protein.
  
  
 
0.597
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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