Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DM40_2084Acyltransferase family protein. (644 aa)    
Predicted Functional Partners:
DM40_193
AMP-binding enzyme family protein.
 
  
 
 0.905
DM40_884
AMP-binding enzyme family protein.
 
  
 
 0.904
DM40_2160
AMP-binding enzyme family protein.
 
 
 
 0.880
DM40_1254
AMP-binding enzyme family protein.
 
 
 
 0.820
DM40_2083
CBS domain protein.
       0.532
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
  
  
 0.526
DM40_5525
AMP-binding enzyme family protein.
 
  
 
 0.495
DM40_1205
Hypothetical protein.
  
     0.482
DM40_2002
CDP-alcohol phosphatidyltransferase family protein.
 
  
 0.481
DM40_3076
Hypothetical protein.
 
   
 0.478
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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