STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2093Sensory box protein. (181 aa)    
Predicted Functional Partners:
DM40_1728
TM2 domain protein.
  
     0.597
DM40_1337
Barstar family protein.
  
     0.594
DM40_2906
Periplasmic binding domain protein.
  
     0.534
DM40_2094
pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit.
       0.525
DM40_2095
pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit.
       0.525
DM40_260
Branched-chain amino acid transport family protein.
  
     0.501
DM40_1035
Acetyltransferase family protein.
  
     0.488
DM40_2778
Sensory box protein.
 
 
 0.477
DM40_1839
smpA / OmlA family protein.
  
     0.469
DM40_1584
Hypothetical protein.
  
     0.464
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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