STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2095pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit. (213 aa)    
Predicted Functional Partners:
DM40_2094
pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit.
 0.999
pcaI
3-oxoadipate CoA-transferase subunit A.
 0.999
DM40_2506
enoyl-CoA hydratase/isomerase family protein.
  
 0.968
DM40_337
enoyl-CoA hydratase/isomerase family protein.
  
 0.968
DM40_481
enoyl-CoA hydratase/isomerase family protein.
  
 0.968
DM40_559
HMGL-like family protein.
  
 
 0.958
DM40_2504
acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.953
phbB-1
acetoacetyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
  0.945
phbB-1-2
acetoacetyl-CoA reductase.
   
 
  0.945
DM40_4542
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein.
  
 
 0.920
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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