STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2152Tetratricopeptide repeat family protein. (280 aa)    
Predicted Functional Partners:
DM40_2154
Tad-like Flp pilus-assembly family protein.
 
  
 0.974
DM40_2150
Type II secretion system (T2SS), F family protein.
 
  
 0.958
DM40_2148
Response regulator.
 
  
 0.951
DM40_2151
Type II secretion system (T2SS), F family protein.
 
  
 0.924
cpaB
pilus_cpaB: Flp pilus assembly protein CpaB.
 
  
 0.901
DM40_2153
Hypothetical protein.
  
    0.864
DM40_2149
Type II/IV secretion system family protein.
 
  
 0.850
DM40_2145
tadE-like family protein.
 
  
 0.831
DM40_2147
Bacterial type II and III secretion system family protein.
 
    0.825
DM40_2155
AAA domain family protein.
 
 
  0.801
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.