STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2158PXPV repeat family protein. (91 aa)    
Predicted Functional Partners:
DM40_5180
Hypothetical protein.
  
    0.544
katE
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
    0.525
DM40_5179
Hypothetical protein.
  
    0.510
DM40_3045
Substrate binding domain of ABC-type glycine betaine transport system family protein.
  
    0.501
osmB
Glycine zipper 2TM domain protein.
   
    0.487
DM40_3600
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
    0.470
bfr
Bacterioferritin; Iron-storage protein.
   
    0.435
coxB-2
coxB: cytochrome c oxidase, subunit II.
   
 
 0.426
coxB-3
coxB: cytochrome c oxidase, subunit II.
   
 
 0.426
hfq
RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
       0.408
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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