STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2180Oxidoreductase, NAD-binding Rossmann fold family protein. (328 aa)    
Predicted Functional Partners:
DM40_2047
Thiamine pyrophosphate enzyme, central domain protein; Belongs to the TPP enzyme family.
  
  
 0.795
DM40_2045
kduI/IolB family protein.
  
  
 0.787
iolE
Xylose isomerase-like TIM barrel family protein.
  
 
 0.741
DM40_3755
wecB: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 
 0.663
DM40_2054
Xylose isomerase-like TIM barrel family protein.
  
 
 0.658
DM40_2456
Beta-eliminating lyase family protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.650
wecE
ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase family protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.650
DM40_3155
Xylose isomerase-like TIM barrel family protein.
  
 
 0.631
DM40_921
Hypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein.
  
  
 
0.585
DM40_2052
Xylose isomerase-like TIM barrel family protein.
  
 
 0.570
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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