STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_219Mannitol dehydrogenase Rossmann domain protein. (464 aa)    
Predicted Functional Partners:
xylB
xylB: xylulokinase.
 
  
 0.988
DM40_2166
pfkB carbohydrate kinase family protein.
    
 0.932
DM40_573
pfkB carbohydrate kinase family protein; Belongs to the carbohydrate kinase PfkB family.
    
 0.932
DM40_4292
Hypothetical protein; Glycosyl hydrolases family 32 N-terminal domain protein; Belongs to the glycosyl hydrolase 32 family.
     
 0.926
xylA
xylose_isom_A: xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.870
xylB-2
xylB: xylulokinase.
 
  
 0.854
cpsB
GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
 0.849
DM40_236
Hypothetical protein; FGGY family of carbohydrate kinase, N-terminal domain protein.
 
  
 0.816
garD
galactar-dH20: galactarate dehydratase.
 
 
 0.784
DM40_394
Band 3 cytoplasmic domain protein.
  
 
 0.770
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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