STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2205Fatty acid hydroxylase superfamily protein. (208 aa)    
Predicted Functional Partners:
shc
Hopene_cyclase: squalene-hopene cyclase.
   
 
 0.713
hpnD
hpnD: squalene synthase HpnD.
  
 
 0.532
hpnD-2
hpnD: squalene synthase HpnD.
  
 
 0.532
DM40_4285
Squalene/phytoene synthase family protein.
  
 
 0.532
DM40_2206
Lysozyme domain protein.
       0.506
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
    
   0.484
DM40_1902
NADH(P)-binding family protein.
  
     0.449
DM40_1853
GGDEF: diguanylate cyclase domain protein.
   
    0.421
DM40_4
GGDEF: diguanylate cyclase domain protein.
   
    0.421
DM40_570
GGDEF: diguanylate cyclase domain protein.
   
    0.421
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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