STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_223HAD-SF-IA-v3: HAD hydrolase, IA, variant 3 family protein. (223 aa)    
Predicted Functional Partners:
DM40_225
Binding--dependent transport system inner membrane component family protein.
 
  
 0.810
DM40_224
Binding--dependent transport system inner membrane component family protein.
 
   
 0.745
DM40_66
HAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein.
  
   
 0.739
DM40_222
ABC transporter family protein; Belongs to the ABC transporter superfamily.
 
   
 0.700
DM40_4439
Zeta toxin family protein.
  
    0.653
DM40_226
Bacterial extracellular solute-binding family protein.
 
   
 0.586
DM40_219
Mannitol dehydrogenase Rossmann domain protein.
   
 0.545
ptsP
PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.
 
   
 0.439
DM40_227
agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit.
 
     0.415
DM40_228
Hypothetical protein.
 
     0.413
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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