Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DM40_2232Universal stress family protein. (165 aa)    
Predicted Functional Partners:
DM40_2230
nodJ: ABC-2 type transporter, NodJ family protein.
 
     0.594
nodI
Nodulation ABC transporter NodI; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
 
     0.571
DM40_3973
Polysaccharide biosynthesis family protein.
  
     0.567
DM40_292
Copper resistance D family protein.
  
     0.541
DM40_2685
Universal stress family protein.
  
     0.523
DM40_3308
Outer membrane porin, OprD family protein.
  
     0.504
DM40_4438
Universal stress family protein.
  
     0.495
DM40_4366
Universal stress family protein.
  
     0.490
DM40_4637
Part of AAA domain protein.
  
     0.472
DM40_3480
SMP-30/Gluconolaconase/LRE-like region family protein.
  
    0.468
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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