Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM40_2256RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (394 aa)    
Predicted Functional Partners:
DM40_2257
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein.
 0.994
DM40_239
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein.
 0.974
DM40_2258
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
   0.947
DM40_4306
acrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.865
DM40_5822
acrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.865
DM40_3184
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein.
 
 
 0.839
oprM
Outer membrane protein oprM.
  
 
 0.824
oprM-2
Outer membrane protein oprM.
  
 
 0.824
DM40_4410
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
  
   0.801
DM40_3907
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
  
 
 0.791
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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