STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2267Taurine catabolism dioxygenase TauD, TfdA family protein. (339 aa)    
Predicted Functional Partners:
DM40_2274
AA-adenyl-dom: amino acid adenylation domain protein.
  
 0.962
DM40_2266
mbtH-like family protein.
 
   
 0.892
dltA
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1.
  
 0.867
fhuF
fe_III_red_FhuF: siderophore-iron reductase FhuF.
 
     0.820
DM40_2269
fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.780
DM40_2268
ABC transporter family protein.
       0.773
tauB
ABC transporter family protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
  
 
  0.675
DM40_2272
Cyc_pep_trnsptr: cyclic peptide transporter family protein.
 
   
 0.665
tauA
taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein.
  
 
 0.642
DM40_2271
Periplasmic binding family protein.
 
     0.563
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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