STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2267Taurine catabolism dioxygenase TauD, TfdA family protein. (339 aa)    
Predicted Functional Partners:
DM40_2274
AA-adenyl-dom: amino acid adenylation domain protein.
  
 0.962
DM40_2266
mbtH-like family protein.
 
   
 0.898
dltA
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1.
  
 0.862
fhuF
fe_III_red_FhuF: siderophore-iron reductase FhuF.
 
   
 0.818
DM40_2269
fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
     
 0.800
DM40_2268
ABC transporter family protein.
     
 0.774
DM40_2272
Cyc_pep_trnsptr: cyclic peptide transporter family protein.
 
   
 0.672
DM40_2271
Periplasmic binding family protein.
 
   
 0.550
DM40_2265
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
 
     0.535
DM40_5282
Condensation domain protein.
 
  
 0.530
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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