STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2280Hypothetical protein. (326 aa)    
Predicted Functional Partners:
DM40_2281
Hypothetical protein.
 
  
 0.988
DM40_4189
Calcineurin-like phosphoesterase family protein.
 
     0.691
DM40_1514
Hypothetical protein.
  
     0.689
DM40_739
Hypothetical protein.
  
     0.685
DM40_3561
Bacterial regulatory s, luxR family protein.
  
     0.683
DM40_3249
Peptidase MA superfamily protein.
  
     0.679
DM40_4253
NAD dependent epimerase/dehydratase family protein.
  
     0.631
DM40_4461
BNR repeat-like domain protein.
  
     0.550
DM40_3013
F5/8 type C domain protein.
  
     0.530
DM40_3218
Hypothetical protein.
  
     0.515
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.