STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_231Periplasmic solute binding family protein. (307 aa)    
Predicted Functional Partners:
DM40_234
ABC 3 transport family protein.
 
 
 0.998
DM40_232
ABC transporter family protein.
 
  
 0.953
DM40_4571
Putative DNA-binding protein.
  
 
 0.780
fur-2
Ferric uptake regulator family protein; Belongs to the Fur family.
  
  
 0.766
rpmB
L28: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.687
rpsN
Ribosomal S14p/S29e family protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.683
cobW
cobW: cobalamin biosynthesis protein CobW.
  
  
 0.634
DM40_690
Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.
  
  
 0.634
DM40_842
Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein.
  
  
 0.634
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
     
 0.535
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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