STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2336cyd_oper_ybgT: cyd operon protein YbgT. (48 aa)    
Predicted Functional Partners:
DM40_3263
Bacterial Cytochrome Ubiquinol Oxidase family protein.
  
 0.951
cydA
Cytochrome d ubiquinol oxidase subunit 1.
  
 0.951
DM40_5250
Bacterial Cytochrome Ubiquinol Oxidase family protein.
  
 0.951
DM40_5342
Bacterial Cytochrome Ubiquinol Oxidase family protein.
  
 0.951
cydB
cydB: cytochrome d ubiquinol oxidase, subunit II.
  
 0.945
cydB-2
cydB: cytochrome d ubiquinol oxidase, subunit II.
  
 0.945
cydB-3
cydB: cytochrome d ubiquinol oxidase, subunit II.
  
 0.945
cydB-4
cydB: cytochrome d ubiquinol oxidase, subunit II.
  
 0.945
cydX
cyd_oper_ybgT: cyd operon protein YbgT.
     
 
0.900
DM40_2337
AAA domain protein.
       0.773
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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