STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2340LTXXQ motif family protein. (179 aa)    
Predicted Functional Partners:
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 0.978
DM40_292
Copper resistance D family protein.
  
     0.713
DM40_1852
HDOD domain protein.
  
    0.685
DM40_3973
Polysaccharide biosynthesis family protein.
  
     0.684
fliG
fliG: flagellar motor switch protein FliG.
   
   0.642
DM40_1664
Dnaq: exonuclease, DNA polymerase III, epsilon subunit family domain protein.
 
  
 0.638
DM40_5671
Cytochrome c family protein.
  
     0.636
DM40_2973
META domain protein.
  
     0.632
DM40_3480
SMP-30/Gluconolaconase/LRE-like region family protein.
  
     0.628
DM40_3833
Hypothetical protein.
  
     0.627
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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