STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2348Xylose isomerase-like TIM barrel family protein. (254 aa)    
Predicted Functional Partners:
DM40_2347
pfkB carbohydrate kinase family protein.
 
 0.965
DM40_2047
Thiamine pyrophosphate enzyme, central domain protein; Belongs to the TPP enzyme family.
  
 
 0.849
DM40_2346
Sugar (and other) transporter family protein.
 
    0.726
DM40_2048
pfkB carbohydrate kinase family protein.
  
 
 0.656
ghrB
Glyoxylate/hydroxypyruvate reductase B; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
  0.655
DM40_3308
Outer membrane porin, OprD family protein.
  
     0.647
DM40_2045
kduI/IolB family protein.
  
  
 0.617
xylB
xylB: xylulokinase.
  
 
 0.612
DM40_2344
Periplasmic binding s and sugar binding domain of LacI family protein.
 
    0.601
iolG
Hypothetical protein; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
  
 
 0.560
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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