DM40_2419 protein (Burkholderia cenocepacia)

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Score

DM40_2419

lysM domain protein. (297 aa)

Predicted Functional Partners:

surE

0.883

pcm

0.877

rpoS

0.875

DM40_2417

0.828

DM40_3236

0.583

DM40_1106

0.582

DM40_2602

0.582

lepB

0.578

secD

0.529

DM40_631

0.528

Your Current Organism:

Burkholderia cenocepacia

NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM40_1106	DM40_2419	DM40_1106	DM40_2419	PBP_1a_fam: penicillin-binding, 1A family protein.	lysM domain protein.	0.582
DM40_1106	lepB	DM40_1106	DM40_1795	PBP_1a_fam: penicillin-binding, 1A family protein.	sigpep_I_bact: signal peptidase I; Belongs to the peptidase S26 family.	0.624
DM40_1106	secD	DM40_1106	DM40_1411	PBP_1a_fam: penicillin-binding, 1A family protein.	Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.	0.670
DM40_2417	DM40_2419	DM40_2417	DM40_2419	DNA polymerase family B, exonuclease domain protein.	lysM domain protein.	0.828
DM40_2417	pcm	DM40_2417	DM40_2420	DNA polymerase family B, exonuclease domain protein.	protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.	0.825
DM40_2417	rpoS	DM40_2417	DM40_2418	DNA polymerase family B, exonuclease domain protein.	RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.	0.856
DM40_2417	surE	DM40_2417	DM40_2421	DNA polymerase family B, exonuclease domain protein.	5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.	0.808
DM40_2419	DM40_1106	DM40_2419	DM40_1106	lysM domain protein.	PBP_1a_fam: penicillin-binding, 1A family protein.	0.582
DM40_2419	DM40_2417	DM40_2419	DM40_2417	lysM domain protein.	DNA polymerase family B, exonuclease domain protein.	0.828
DM40_2419	DM40_2602	DM40_2419	DM40_2602	lysM domain protein.	PBP_1a_fam: penicillin-binding, 1A family protein.	0.582
DM40_2419	DM40_3236	DM40_2419	DM40_3236	lysM domain protein.	PBP_1a_fam: penicillin-binding, 1A family protein.	0.583
DM40_2419	DM40_631	DM40_2419	DM40_631	lysM domain protein.	Transglycosylase SLT domain protein.	0.528
DM40_2419	lepB	DM40_2419	DM40_1795	lysM domain protein.	sigpep_I_bact: signal peptidase I; Belongs to the peptidase S26 family.	0.578
DM40_2419	pcm	DM40_2419	DM40_2420	lysM domain protein.	protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.	0.877
DM40_2419	rpoS	DM40_2419	DM40_2418	lysM domain protein.	RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.	0.875
DM40_2419	secD	DM40_2419	DM40_1411	lysM domain protein.	Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.	0.529
DM40_2419	surE	DM40_2419	DM40_2421	lysM domain protein.	5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.	0.883
DM40_2602	DM40_2419	DM40_2602	DM40_2419	PBP_1a_fam: penicillin-binding, 1A family protein.	lysM domain protein.	0.582
DM40_2602	lepB	DM40_2602	DM40_1795	PBP_1a_fam: penicillin-binding, 1A family protein.	sigpep_I_bact: signal peptidase I; Belongs to the peptidase S26 family.	0.604
DM40_2602	secD	DM40_2602	DM40_1411	PBP_1a_fam: penicillin-binding, 1A family protein.	Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.	0.668

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