STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_243Helix-turn-helix domain protein. (333 aa)    
Predicted Functional Partners:
DM40_242
Putative isochorismatase hydrolase.
 
    0.649
DM40_5811
Helix-turn-helix domain protein.
  
   0.591
DM40_5029
Helix-turn-helix domain protein.
  
   0.582
DM40_3848
Helix-turn-helix domain protein.
  
   0.545
DM40_1758
Helix-turn-helix domain protein.
  
   0.468
DM40_4300
Helix-turn-helix domain protein.
  
   0.438
DM40_4872
Rhodanese-like domain protein.
 
    0.431
DM40_3507
Helix-turn-helix domain protein.
  
   0.424
DM40_4956
Helix-turn-helix domain protein.
  
   0.412
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.