STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2454Dolichyl-phosphate-mannose-mannosyltransferase family protein. (558 aa)    
Predicted Functional Partners:
DM40_2460
Polysaccharide deacetylase family protein.
 
  
 0.982
DM40_2455
Small Multidrug Resistance family protein.
 
  
 0.963
arnC
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
 
 
 0.955
DM40_2459
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
  
 0.898
DM40_2458
Formyl transferase family protein.
 
  
 0.887
DM40_4093
Glycosyl transferase 2 family protein.
 
 
 0.811
DM40_5736
Glycosyl transferase 2 family protein.
 
 
 0.809
DM40_2456
Beta-eliminating lyase family protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.788
DM40_685
Bacterial lipid A biosynthesis acyltransferase family protein.
 
  
 0.657
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
  
 0.654
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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