STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2455Small Multidrug Resistance family protein. (123 aa)    
Predicted Functional Partners:
DM40_2454
Dolichyl-phosphate-mannose-mannosyltransferase family protein.
 
  
 0.963
DM40_2460
Polysaccharide deacetylase family protein.
 
  
 0.960
DM40_2456
Beta-eliminating lyase family protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.834
DM40_2459
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
    0.829
arnC
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
 
  
 0.795
DM40_2458
Formyl transferase family protein.
 
    0.746
DM40_2453
Hypothetical protein.
       0.530
wecE
ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase family protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.524
speD
S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.
   
    0.465
DM40_1947
Hypothetical protein.
  
     0.421
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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