STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_246Carboxypeptidase regulatory-like domain protein. (146 aa)    
Predicted Functional Partners:
DM40_1675
Hypothetical protein.
  
    0.627
DM40_1292
CNP1-like family protein.
  
     0.598
DM40_5332
Hypothetical protein.
  
     0.563
DM40_247
degP_htrA_DO: peptidase Do family protein; Belongs to the peptidase S1C family.
       0.535
DM40_1402
Hypothetical protein.
  
     0.533
DM40_1661
Hypothetical protein; OMP85_target: outer membrane insertion C-terminal signal domain protein.
  
     0.522
lptE
Lipopolysaccharide-assembly family protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
     0.512
DM40_2868
Hypothetical protein.
  
     0.501
DM40_4286
Gram-negative porin family protein.
  
     0.496
DM40_245
Hypothetical protein.
       0.490
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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