STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2461Redoxin family protein. (153 aa)    
Predicted Functional Partners:
ahpC_1
Redoxin family protein.
 
 
 0.815
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
   
   0.765
DM40_2460
Polysaccharide deacetylase family protein.
       0.601
DM40_2462
phoH-like family protein.
       0.565
arnC
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
       0.550
DM40_2458
Formyl transferase family protein.
       0.550
DM40_2459
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
       0.550
flgC
flgC: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.538
DM40_5422
ahpC/TSA family protein.
  
  
 0.535
DM40_2453
Hypothetical protein.
  
    0.521
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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