Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DM40_2462phoH-like family protein. (604 aa)    
Predicted Functional Partners:
DM40_2461
Redoxin family protein.
       0.565
DM40_2247
Hypothetical protein; prkA serine kinase C-terminal domain protein.
   
  
 0.536
DM40_2248
Hypothetical protein; Belongs to the UPF0229 family.
   
    0.509
rumA
23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
  
     0.489
DM40_2249
spoVR like family protein.
   
    0.481
DM40_2463
nlpC/P60 family protein.
       0.480
raiA
yfiA: ribosomal subunit interface protein.
  
    0.468
DM40_2986
Hypothetical protein.
  
     0.433
DM40_2953
RNaseEG: ribonuclease, Rne/Rng family domain protein.
  
    0.403
DM40_431
ABC transporter family protein.
   
    0.402
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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