STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gclGlyox_carbo_lig: glyoxylate carboligase; Belongs to the TPP enzyme family. (591 aa)    
Predicted Functional Partners:
hyi
OH-pyruv-isom: hydroxypyruvate isomerase; Belongs to the hyi family.
 
 
 0.990
DM40_2476
Tartro_sem_red: 2-hydroxy-3-oxopropionate reductase.
 
 
 0.984
aceB
malate_syn_A: malate synthase A; Belongs to the malate synthase family.
    
 0.919
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
    
 0.919
DM40_558
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
  
  
 0.913
aceA
Isocit_lyase: isocitrate lyase.
     
 0.909
DM40_4470
Isocitrate lyase.
     
 0.909
DM40_5802
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
     
 0.902
eda
Eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein.
     
 0.901
DM40_1766
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
    
 0.901
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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