STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
DM40_2476Tartro_sem_red: 2-hydroxy-3-oxopropionate reductase. (297 aa)    
Predicted Functional Partners:
hyi
OH-pyruv-isom: hydroxypyruvate isomerase; Belongs to the hyi family.
 
 0.987
gcl
Glyox_carbo_lig: glyoxylate carboligase; Belongs to the TPP enzyme family.
 
 
 0.984
DM40_2527
Glycerate kinase family protein; Belongs to the glycerate kinase type-1 family.
  
 
 0.907
DM40_1766
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
    
 0.901
ghrB
Glyoxylate/hydroxypyruvate reductase B; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.901
DM40_558
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
     
  0.900
DM40_5802
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
     
  0.900
DM40_717
hpcH/HpaI aldolase/citrate lyase family protein; Belongs to the HpcH/HpaI aldolase family.
  
 
  0.839
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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