STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2477BON domain protein. (156 aa)    
Predicted Functional Partners:
DM40_2558
25-like lysozyme family protein.
  
   0.990
pilQ
IV_pilus_PilQ: type IV pilus secretin PilQ family protein.
   
 
 0.980
DM40_2547
Phage late control D family protein.
  
   0.972
DM40_2553
Phage tail sheath family protein.
  
 
 0.968
DM40_2566
Bacteriophage lambda head decoration D family protein.
  
 
 0.968
DM40_2561
phage_P2_V: phage baseplate assembly V family protein.
   
   0.843
DM40_1107
Hypothetical protein.
    
   0.823
DM40_1109
Hypothetical protein.
    
   0.823
DM40_1478
Hypothetical protein.
   
  
 0.819
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.785
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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