STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2482Glycosyl transferases group 1 family protein. (354 aa)    
Predicted Functional Partners:
DM40_4886
Amylo-alpha-1,6-glucosidase family protein.
 
 0.832
treS
treS_nterm: trehalose synthase.
  
 
 0.658
DM40_3858
Carbohydrate-binding module 48 family protein; Belongs to the glycosyl hydrolase 13 family.
   
  0.639
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
  0.639
treZ
trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase.
   
  0.639
cpsB
GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
 
 0.600
DM40_2956
Major Facilitator Superfamily protein.
  
     0.561
DM40_3835
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.523
DM40_4242
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.523
DM40_1824
ABC transporter family protein.
  
  0.522
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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