Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2507AMP-binding enzyme family protein. (543 aa)    
Predicted Functional Partners:
DM40_5300
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 
  0.924
DM40_338
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 
  0.923
DM40_4308
AMP-binding enzyme family protein.
  
  
 
0.916
DM40_3495
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 
  0.764
DM40_2882
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 
  0.723
DM40_2506
enoyl-CoA hydratase/isomerase family protein.
 
 
 0.699
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.635
DM40_4239
Aminoacyl carrier protein.
  
 
 0.624
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.621
DM40_479
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 
  0.613
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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