STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2511bolA-like family protein; Belongs to the BolA/IbaG family. (102 aa)    
Predicted Functional Partners:
grxD
Monothiol glutaredoxin, Grx4 family; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 
 0.973
ispZ
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
 
    0.897
DM40_2512
PPIC-type PPIASE domain protein.
  
    0.826
selO
Hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.
 
     0.627
msrB
Peptide methionine sulfoxide reductase MsrB.
  
    0.608
DM40_3652
Hypothetical protein; Glutathione S-transferase, N-terminal domain protein; Belongs to the GST superfamily.
  
     0.608
DM40_1420
Ferritin-like domain protein; Belongs to the Dps family.
   
  
 0.599
DM40_1702
Hypothetical protein.
  
    0.597
DM40_542
Hypothetical protein; Glutathione S-transferase, N-terminal domain protein.
  
     0.568
DM40_3582
Hypothetical protein; Glutathione S-transferase, N-terminal domain protein.
  
     0.529
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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