STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2527Glycerate kinase family protein; Belongs to the glycerate kinase type-1 family. (381 aa)    
Predicted Functional Partners:
ghrB
Glyoxylate/hydroxypyruvate reductase B; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.958
DM40_1766
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
 
  
 0.957
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
     
 0.949
DM40_1382
Histidine phosphatase super family protein.
     
 0.945
DM40_2368
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
   
 
  0.945
DM40_3118
Aldehyde dehydrogenase family protein.
   
 
  0.945
DM40_52
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
   
 
  0.945
DM40_558
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
    
  0.912
DM40_2476
Tartro_sem_red: 2-hydroxy-3-oxopropionate reductase.
  
 
 0.783
DM40_5815
Aldehyde dehydrogenase family protein.
   
 
  0.767
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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