STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2528marR family protein. (149 aa)    
Predicted Functional Partners:
DM40_4386
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
    0.642
hppD
4HPPD: 4-hydroxyphenylpyruvate dioxygenase.
 
    0.626
DM40_1484
Hypothetical protein.
  
     0.617
DM40_2527
Glycerate kinase family protein; Belongs to the glycerate kinase type-1 family.
       0.602
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
     
 0.578
DM40_1483
FAD binding domain protein.
  
    0.573
DM40_512
Fumarylacetoacetate (FAA) hydrolase family protein.
 
     0.553
maiA
maiA: maleylacetoacetate isomerase.
 
     0.513
DM40_4314
Metallo-beta-lactamase superfamily protein.
  
     0.503
DM40_540
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
  
    0.420
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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