STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2550tape_meas_TP901: phage tail tape measure protein, TP901 family, core region. (805 aa)    
Predicted Functional Partners:
DM40_2549
Phage P2 GpU family protein.
 
  
 0.974
DM40_2548
Phage Tail Protein X family protein.
 
    0.970
DM40_2547
Phage late control D family protein.
 
  
 0.969
DM40_2553
Phage tail sheath family protein.
 
  
 0.916
DM40_2552
Tail_tube: phage major tail tube protein.
 
  
 0.907
DM40_2561
phage_P2_V: phage baseplate assembly V family protein.
 
  
 0.888
DM40_2558
25-like lysozyme family protein.
 
    0.877
DM40_2566
Bacteriophage lambda head decoration D family protein.
 
  
 0.869
DM40_2557
Baseplate J-like family protein.
 
  
 0.855
DM40_2556
tail_P2_I: phage tail protein I.
 
  
 0.792
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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