STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2568Portal_lambda: phage portal protein, lambda family. (495 aa)    
Predicted Functional Partners:
DM40_2567
Peptidase S49 family protein.
    0.938
DM40_2566
Bacteriophage lambda head decoration D family protein.
 
  
 0.931
DM40_2565
Phage major capsid E family protein.
 
     0.905
DM40_2570
Phage terminase large subunit family protein.
 
  
 0.867
DM40_2561
phage_P2_V: phage baseplate assembly V family protein.
 
   
 0.827
DM40_2569
Hypothetical protein.
       0.813
DM40_2557
Baseplate J-like family protein.
 
   
 0.761
DM40_2547
Phage late control D family protein.
 
   
 0.756
DM40_2563
Prophage minor tail Z family protein.
  
    0.741
DM40_2553
Phage tail sheath family protein.
 
  
 0.731
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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