STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2584Putative pyridoxal phosphate biosynthetic protein PdxJ. (426 aa)    
Predicted Functional Partners:
DM40_2583
Hypothetical protein.
       0.773
DM40_2586
Hypothetical protein.
       0.773
DM40_376
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
  
 
 0.691
yhjQ
cellulose_yhjQ: cellulose synthase operon protein YhjQ.
  
 
 0.662
DM40_872
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
  
 
 0.662
soj_1
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
  
 
 0.638
DM40_5459
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
  
 
 0.638
DM40_80
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
  
 
 0.638
gidB
16S rRNA (guanine(527)-N(7))-methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.607
DM40_2582
Putative beta-hexosaminidase.
       0.542
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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