Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DM40_2587Phage integrase family protein. (340 aa)    
Predicted Functional Partners:
DM40_2585
Hypothetical protein.
       0.634
DM40_2561
phage_P2_V: phage baseplate assembly V family protein.
  
  
 0.579
DM40_2558
25-like lysozyme family protein.
  
    0.542
DM40_452
Phosphoribosyl transferase domain protein.
   
    0.527
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.514
DM40_2547
Phage late control D family protein.
  
  
 0.507
DM40_2557
Baseplate J-like family protein.
  
  
 0.505
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
    
 
 0.503
rpmE
L31: ribosomal protein L31.
    
 
 0.502
rpsI
Ribosomal S9/S16 family protein; Belongs to the universal ribosomal protein uS9 family.
    
 
 0.501
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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