STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2607NAD binding domain of 6-phosphogluconate dehydrogenase family protein. (286 aa)    
Predicted Functional Partners:
gcl
Glyox_carbo_lig: glyoxylate carboligase; Belongs to the TPP enzyme family.
 
 
 0.834
hyi
OH-pyruv-isom: hydroxypyruvate isomerase; Belongs to the hyi family.
 
 0.668
mmsA-2
MMSDH: methylmalonate-semialdehyde dehydrogenase.
  
 
  0.645
mmsA-4
MMSDH: methylmalonate-semialdehyde dehydrogenase.
  
 
  0.645
mmsA
MMSDH: methylmalonate-semialdehyde dehydrogenase.
   
 
  0.593
mmsA-3
MMSDH: methylmalonate-semialdehyde dehydrogenase.
   
 
  0.593
DM40_2476
Tartro_sem_red: 2-hydroxy-3-oxopropionate reductase.
  
  
 
0.587
DM40_2190
enoyl-CoA hydratase/isomerase family protein.
 
 
 
  0.578
uca
Urea_carbox: urea carboxylase.
  
 
  0.574
DM40_3297
Acetyltransferase family protein.
    
  0.553
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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