STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2619Permease for cytosine/purine, uracil, thiamine, allantoin family protein. (494 aa)    
Predicted Functional Partners:
DM40_2618
asp/Glu/Hydantoin racemase family protein.
 
     0.919
hydA
D-hydantoinase: dihydropyrimidinase.
 
  
 0.695
uraD
UHCUDC: OHCU decarboxylase.
     
 0.587
DM40_5427
pyrD_sub1_fam: dihydroorotate dehydrogenase family domain protein.
 
   
 0.543
DM40_3435
asp/Glu/Hydantoin racemase family protein.
 
     0.535
puuE
Polysaccharide deacetylase family protein.
       0.502
DM40_2620
Bacterial regulatory s, gntR family protein.
       0.491
DM40_237
Putative purine permease ygfU.
 
  
 0.470
alc-2
Allantoicase: allantoicase; Belongs to the allantoicase family.
  
    0.422
allA-2
Ureidoglycolate hydrolase family protein; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.
       0.403
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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