STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2621LD-carboxypeptidase family protein. (312 aa)    
Predicted Functional Partners:
mpl
L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
 
  
 0.693
amiD
N-acetylmuramoyl-L-alanine amidase AmiD.
  
  
 0.636
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region family protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.575
DM40_1300
N-acetylmuramoyl-L-alanine amidase family protein.
     
 0.567
DM40_198
N-acetylmuramoyl-L-alanine amidase family protein.
    
 0.552
DM40_1198
D-alanyl-D-alanine carboxypeptidase family protein.
     
  0.499
dacB
PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
 
   
 0.481
rlpA
Rare lipoA family protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
   
 
 0.480
DM40_2623
Hypothetical protein.
       0.444
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.423
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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