STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dehIIHAD_type_II: haloacid dehalogenase, type II. (253 aa)    
Predicted Functional Partners:
DM40_564
Alpha/beta hydrolase fold family protein.
  
 
 0.948
dehII-2
HAD_type_II: haloacid dehalogenase, type II.
  
  
0.913
DM40_1222
HAD-SF-IA-v3: HAD hydrolase, IA, variant 3 family protein.
     
  0.900
aceB
malate_syn_A: malate synthase A; Belongs to the malate synthase family.
     
 0.704
DM40_52
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
  
  
  0.693
DM40_2368
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
     
  0.650
DM40_4056
Aldehyde dehydrogenase family protein.
     
  0.650
DM40_5489
Aldehyde dehydrogenase family protein.
     
  0.650
DM40_5510
Aldehyde dehydrogenase family protein.
     
  0.650
DM40_5514
Aldehyde dehydrogenase family protein.
     
  0.650
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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