STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2751comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2. (833 aa)    
Predicted Functional Partners:
DM40_452
Phosphoribosyl transferase domain protein.
 
  
 0.912
dprA
dprA: DNA protecting protein DprA.
 
  
 0.906
DM40_1282
Type IV leader peptidase family protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.900
DM40_1283
Type II secretion system (T2SS), F family protein.
  
  
 0.780
holA
holA: DNA polymerase III, delta subunit.
 
   
 0.748
gspF
gspF: type II secretion system protein F.
  
  
 0.746
DM40_1284
Type II/IV secretion system family protein.
 
  
 0.743
DM40_2442
Helix-hairpin-helix motif family protein.
 
  
 0.732
DM40_4022
Type II/IV secretion system family protein.
 
  
 0.729
DM40_137
Radc: DNA repair RadC family protein.
 
  
 0.727
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.