STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2814hutD family protein. (203 aa)    
Predicted Functional Partners:
hutF
hutF: formiminoglutamate deiminase.
 
    0.918
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.900
hutI
hutI: imidazolonepropionase.
 
   
 0.893
hutC
His_ut_repres: histidine utilization repressor.
 
  
 0.893
hutG
hutG_amidohyd: N-formylglutamate deformylase.
 
    0.892
hutH
hutH: histidine ammonia-lyase.
 
  
 0.797
hutC-4
His_ut_repres: histidine utilization repressor.
 
  
 0.704
hutC-3
His_ut_repres: histidine utilization repressor.
 
  
 0.699
hutC-2
His_ut_repres: histidine utilization repressor.
 
  
 0.648
DM40_1588
Hypothetical protein.
  
     0.463
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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