STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
DM40_2857PHB_DH: 3-hydroxybutyrate dehydrogenase family protein. (262 aa)    
Predicted Functional Partners:
adc
Putative acetoacetate decarboxylase; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
 
  
  0.955
DM40_5498
maoC like domain protein.
 
 
  0.912
DM40_2313
HMGL-like family protein.
   
 
  0.906
DM40_4063
HMGL-like family protein.
   
 
  0.906
DM40_559
HMGL-like family protein.
   
 
  0.906
DM40_2095
pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit.
   
  0.903
phaZ2
D-(-)-3-hydroxybutyrate oligomer hydrolase; Participates in the degradation of poly-3-hydroxybutyrate (PHB). It works downstream of poly(3-hydroxybutyrate) depolymerase, hydrolyzing D(-)-3-hydroxybutyrate oligomers of various length (3HB- oligomers) into 3HB-monomers; Belongs to the D-(-)-3-hydroxybutyrate oligomer hydrolase family.
     
 0.900
DM40_2094
pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit.
    
  0.900
DM40_3427
PHB_DH: 3-hydroxybutyrate dehydrogenase family protein.
  
  
 
0.900
DM40_3426
Patatin-like phospholipase family protein.
 
 
   0.576
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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