STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DM40_2858Putative voltage-gated potassium channel subunit beta. (323 aa)    
Predicted Functional Partners:
DM40_5791
Putative oxidoreductase YdbC.
  
     0.605
rlmJ
Ribosomal RNA small subunit methyltransferase D, RsmJ family protein; Specifically methylates the adenine in position 2030 of 23S rRNA.
       0.560
DM40_2857
PHB_DH: 3-hydroxybutyrate dehydrogenase family protein.
       0.520
DM40_166
Aldo/keto reductase family protein.
 
 
0.481
DM40_1718
Histone deacetylase domain protein.
   
   0.469
DM40_1908
Histone deacetylase domain protein.
   
   0.469
DM40_304
MIP: MIP channel s family protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.466
aqpZ
MIP channel s family protein; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.466
dkgB
Aldo/keto reductase family protein.
 
 
0.442
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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